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Cluster: HRGMv2_1456_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1456_21 HRGMv2_1456_21_12 13276 14676 + GH1
TC HRGMv2_1456_21 HRGMv2_1456_21_13 14797 16140 + 4.A.3.2.9
TC HRGMv2_1456_21 HRGMv2_1456_21_14 16301 16603 + 4.A.3.2.9
TC HRGMv2_1456_21 HRGMv2_1456_21_15 16613 16945 + 4.A.3.2.3
STP HRGMv2_1456_21 HRGMv2_1456_21_16 17187 18140 + Glucokinase
pfam HRGMv2_1456_21 HRGMv2_1456_21_17 18306 19229 + DHH | DHHA2
TC HRGMv2_1456_21 HRGMv2_1456_21_18 19498 20856 + 2.A.33.1.1
Gene ID: HRGMv2_1456_21_12
Type: CAZyme
Location: 13276 - 14676 (+)
Gene ID: HRGMv2_1456_21_13
Type: TC
Location: 14797 - 16140 (+)
Gene ID: HRGMv2_1456_21_14
Type: TC
Location: 16301 - 16603 (+)
Gene ID: HRGMv2_1456_21_15
Type: TC
Location: 16613 - 16945 (+)
Gene ID: HRGMv2_1456_21_16
Type: STP
Location: 17187 - 18140 (+)
Gene ID: HRGMv2_1456_21_17
Type: pfam
Location: 18306 - 19229 (+)
Gene ID: HRGMv2_1456_21_18
Type: TC
Location: 19498 - 20856 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1456_21_14 vegan > omnivore 1.07188 0.00863

🧭 Explore Read Mapping of CGC

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