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Cluster: HRGMv2_1456_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1456_17 HRGMv2_1456_17_28 31335 32504 - CE9
STP HRGMv2_1456_17 HRGMv2_1456_17_29 32622 33788 - SIS | SIS
TF HRGMv2_1456_17 HRGMv2_1456_17_30 33903 34634 - GntR
TC HRGMv2_1456_17 HRGMv2_1456_17_31 34820 35902 - 4.A.6.1.4
TC HRGMv2_1456_17 HRGMv2_1456_17_32 35892 36692 - 4.A.6.1.4
TC HRGMv2_1456_17 HRGMv2_1456_17_33 36783 37265 - 4.A.6.1.4
pfam HRGMv2_1456_17 HRGMv2_1456_17_34 37302 37583 - YajC
TC HRGMv2_1456_17 HRGMv2_1456_17_35 37583 38026 - 4.A.6.1.16
Gene ID: HRGMv2_1456_17_28
Type: CAZyme
Location: 31335 - 32504 (-)
Gene ID: HRGMv2_1456_17_29
Type: STP
Location: 32622 - 33788 (-)
Gene ID: HRGMv2_1456_17_30
Type: TF
Location: 33903 - 34634 (-)
Gene ID: HRGMv2_1456_17_31
Type: TC
Location: 34820 - 35902 (-)
Gene ID: HRGMv2_1456_17_32
Type: TC
Location: 35892 - 36692 (-)
Gene ID: HRGMv2_1456_17_33
Type: TC
Location: 36783 - 37265 (-)
Gene ID: HRGMv2_1456_17_34
Type: pfam
Location: 37302 - 37583 (-)
Gene ID: HRGMv2_1456_17_35
Type: TC
Location: 37583 - 38026 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1456_17_34 vegan > omnivore 1.10641 0.00863

🧭 Explore Read Mapping of CGC

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