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Cluster: HRGMv2_1455_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1455_10 HRGMv2_1455_10_79 83125 83568 + 4.A.6.1.16
pfam HRGMv2_1455_10 HRGMv2_1455_10_80 83568 83849 + YajC
TC HRGMv2_1455_10 HRGMv2_1455_10_81 83886 84368 + 4.A.6.1.4
TC HRGMv2_1455_10 HRGMv2_1455_10_82 84459 85259 + 4.A.6.1.4
TC HRGMv2_1455_10 HRGMv2_1455_10_83 85249 86331 + 4.A.6.1.4
TF HRGMv2_1455_10 HRGMv2_1455_10_84 86517 87248 + GntR
STP HRGMv2_1455_10 HRGMv2_1455_10_85 87363 88529 + SIS | SIS
CAZyme HRGMv2_1455_10 HRGMv2_1455_10_86 88649 89818 + CE9
Gene ID: HRGMv2_1455_10_79
Type: TC
Location: 83125 - 83568 (+)
Gene ID: HRGMv2_1455_10_80
Type: pfam
Location: 83568 - 83849 (+)
Gene ID: HRGMv2_1455_10_81
Type: TC
Location: 83886 - 84368 (+)
Gene ID: HRGMv2_1455_10_82
Type: TC
Location: 84459 - 85259 (+)
Gene ID: HRGMv2_1455_10_83
Type: TC
Location: 85249 - 86331 (+)
Gene ID: HRGMv2_1455_10_84
Type: TF
Location: 86517 - 87248 (+)
Gene ID: HRGMv2_1455_10_85
Type: STP
Location: 87363 - 88529 (+)
Gene ID: HRGMv2_1455_10_86
Type: CAZyme
Location: 88649 - 89818 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1455_10_80 vegan > omnivore 1.04291 0.00863

🧭 Explore Read Mapping of CGC

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