Cluster: HRGMv2_1455_CGC17
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_1455
- CGC Family ID: CGCFAM_00464
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1455_8 | HRGMv2_1455_8_81 | 102489 | 103724 | - | GH105 |
| pfam | HRGMv2_1455_8 | HRGMv2_1455_8_82 | 103832 | 104551 | - | Lipase_GDSL | Lipase_GDSL_2 |
| CAZyme | HRGMv2_1455_8 | HRGMv2_1455_8_83 | 104569 | 105054 | - | CE19 |
| CAZyme | HRGMv2_1455_8 | HRGMv2_1455_8_84 | 105041 | 106741 | - | CE8 |
| CAZyme | HRGMv2_1455_8 | HRGMv2_1455_8_85 | 106873 | 108468 | - | GH28 |
| TC | HRGMv2_1455_8 | HRGMv2_1455_8_86 | 108583 | 110142 | - | 2.A.2.5.1 |
Gene ID: HRGMv2_1455_8_81
Type: CAZyme
Location: 102489 - 103724 (-)
Type: CAZyme
Location: 102489 - 103724 (-)
Gene ID: HRGMv2_1455_8_82
Type: pfam
Location: 103832 - 104551 (-)
Type: pfam
Location: 103832 - 104551 (-)
Gene ID: HRGMv2_1455_8_83
Type: CAZyme
Location: 104569 - 105054 (-)
Type: CAZyme
Location: 104569 - 105054 (-)
Gene ID: HRGMv2_1455_8_84
Type: CAZyme
Location: 105041 - 106741 (-)
Type: CAZyme
Location: 105041 - 106741 (-)
Gene ID: HRGMv2_1455_8_85
Type: CAZyme
Location: 106873 - 108468 (-)
Type: CAZyme
Location: 106873 - 108468 (-)
Gene ID: HRGMv2_1455_8_86
Type: TC
Location: 108583 - 110142 (-)
Type: TC
Location: 108583 - 110142 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp019425015
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.