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Cluster: HRGMv2_1455_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1455_5 HRGMv2_1455_5_136 157805 158470 + 9.B.18.1.2
CAZyme HRGMv2_1455_5 HRGMv2_1455_5_137 158471 159304 + GT2
CAZyme HRGMv2_1455_5 HRGMv2_1455_5_138 159309 160301 + GT2
NULL(UNKNOWN) HRGMv2_1455_5 HRGMv2_1455_5_139 160326 160493 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1455_5 HRGMv2_1455_5_140 160496 161611 + EpsG
CAZyme HRGMv2_1455_5 HRGMv2_1455_5_141 161604 162599 + GT2
CAZyme HRGMv2_1455_5 HRGMv2_1455_5_142 162999 164162 + GT2
Gene ID: HRGMv2_1455_5_136
Type: TC
Location: 157805 - 158470 (+)
Gene ID: HRGMv2_1455_5_137
Type: CAZyme
Location: 158471 - 159304 (+)
Gene ID: HRGMv2_1455_5_138
Type: CAZyme
Location: 159309 - 160301 (+)
Gene ID: HRGMv2_1455_5_139
Type:
Location: 160326 - 160493 (+)
Gene ID: HRGMv2_1455_5_140
Type: pfam
Location: 160496 - 161611 (+)
Gene ID: HRGMv2_1455_5_141
Type: CAZyme
Location: 161604 - 162599 (+)
Gene ID: HRGMv2_1455_5_142
Type: CAZyme
Location: 162999 - 164162 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1455_5_136 vegan > omnivore 1.80645 0.00863

🧭 Explore Read Mapping of CGC

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