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Cluster: HRGMv2_1454_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1454_4 HRGMv2_1454_4_35 40562 41731 - CE9
STP HRGMv2_1454_4 HRGMv2_1454_4_36 41849 43015 - SIS | SIS
TF HRGMv2_1454_4 HRGMv2_1454_4_37 43130 43861 - GntR
TC HRGMv2_1454_4 HRGMv2_1454_4_38 44046 45128 - 4.A.6.1.4
TC HRGMv2_1454_4 HRGMv2_1454_4_39 45118 45918 - 4.A.6.1.4
TC HRGMv2_1454_4 HRGMv2_1454_4_40 46009 46491 - 4.A.6.1.4
pfam HRGMv2_1454_4 HRGMv2_1454_4_41 46528 46809 - YajC
TC HRGMv2_1454_4 HRGMv2_1454_4_42 46809 47252 - 4.A.6.1.16
Gene ID: HRGMv2_1454_4_35
Type: CAZyme
Location: 40562 - 41731 (-)
Gene ID: HRGMv2_1454_4_36
Type: STP
Location: 41849 - 43015 (-)
Gene ID: HRGMv2_1454_4_37
Type: TF
Location: 43130 - 43861 (-)
Gene ID: HRGMv2_1454_4_38
Type: TC
Location: 44046 - 45128 (-)
Gene ID: HRGMv2_1454_4_39
Type: TC
Location: 45118 - 45918 (-)
Gene ID: HRGMv2_1454_4_40
Type: TC
Location: 46009 - 46491 (-)
Gene ID: HRGMv2_1454_4_41
Type: pfam
Location: 46528 - 46809 (-)
Gene ID: HRGMv2_1454_4_42
Type: TC
Location: 46809 - 47252 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1454_4_41 vegan > omnivore 1.09515 0.00701

🧭 Explore Read Mapping of CGC

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