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Cluster: HRGMv2_1454_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1454_3 HRGMv2_1454_3_103 105219 106595 - GH13_20
TC HRGMv2_1454_3 HRGMv2_1454_3_104 106778 107974 - 2.A.1.2.18
TC HRGMv2_1454_3 HRGMv2_1454_3_105 108099 110459 - 9.A.8.1.6
NULL(UNKNOWN) HRGMv2_1454_3 HRGMv2_1454_3_106 110581 110901 - NULL(UNKNOWN)
[View Structural Homologs]
peptidase HRGMv2_1454_3 HRGMv2_1454_3_107 110949 111848 - S09.UPW
TC HRGMv2_1454_3 HRGMv2_1454_3_108 112095 112658 + 4.A.1.2.6
pfam HRGMv2_1454_3 HRGMv2_1454_3_109 112839 114242 + tRNA-synt_2 | tRNA_anti-codon
NULL(UNKNOWN) HRGMv2_1454_3 HRGMv2_1454_3_110 114492 115277 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1454_3 HRGMv2_1454_3_111 115438 116418 + 3.A.1.34.1
TC HRGMv2_1454_3 HRGMv2_1454_3_112 116623 117546 + 3.A.1.34.1
TC HRGMv2_1454_3 HRGMv2_1454_3_113 117539 118333 + 3.A.1.34.1
pfam HRGMv2_1454_3 HRGMv2_1454_3_114 118491 120515 + Metallophos | 5_nucleotid_C
TC HRGMv2_1454_3 HRGMv2_1454_3_115 120644 121411 + 1.A.23.4.10
Gene ID: HRGMv2_1454_3_103
Type: CAZyme
Location: 105219 - 106595 (-)
Gene ID: HRGMv2_1454_3_104
Type: TC
Location: 106778 - 107974 (-)
Gene ID: HRGMv2_1454_3_105
Type: TC
Location: 108099 - 110459 (-)
Gene ID: HRGMv2_1454_3_106
Type:
Location: 110581 - 110901 (-)
Gene ID: HRGMv2_1454_3_107
Type: peptidase
Location: 110949 - 111848 (-)
Gene ID: HRGMv2_1454_3_108
Type: TC
Location: 112095 - 112658 (+)
Gene ID: HRGMv2_1454_3_109
Type: pfam
Location: 112839 - 114242 (+)
Gene ID: HRGMv2_1454_3_110
Type:
Location: 114492 - 115277 (+)
Gene ID: HRGMv2_1454_3_111
Type: TC
Location: 115438 - 116418 (+)
Gene ID: HRGMv2_1454_3_112
Type: TC
Location: 116623 - 117546 (+)
Gene ID: HRGMv2_1454_3_113
Type: TC
Location: 117539 - 118333 (+)
Gene ID: HRGMv2_1454_3_114
Type: pfam
Location: 118491 - 120515 (+)
Gene ID: HRGMv2_1454_3_115
Type: TC
Location: 120644 - 121411 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1454_3_114 vegan > omnivore 1.92729 0.00701
HRGMv2_1454_3_114 vegetarian > omnivore 1.37618 0.01287

🧭 Explore Read Mapping of CGC

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