Cluster: HRGMv2_1453_CGC9
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1453
- CGC Family ID: CGCFAM_00289
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1453_23 | HRGMv2_1453_23_16 | 24301 | 25707 | + | CE4 |
| NULL(UNKNOWN) | HRGMv2_1453_23 | HRGMv2_1453_23_17 | 25742 | 26002 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | HRGMv2_1453_23 | HRGMv2_1453_23_18 | 26038 | 27882 | + | CBS | CBS |
| TC | HRGMv2_1453_23 | HRGMv2_1453_23_19 | 27891 | 29153 | + | 2.A.55.3.6 |
Gene ID: HRGMv2_1453_23_16
Type: CAZyme
Location: 24301 - 25707 (+)
Type: CAZyme
Location: 24301 - 25707 (+)
Gene ID: HRGMv2_1453_23_17
Type:
Location: 25742 - 26002 (-)
Type:
Location: 25742 - 26002 (-)
Gene ID: HRGMv2_1453_23_18
Type: STP
Location: 26038 - 27882 (+)
Type: STP
Location: 26038 - 27882 (+)
Gene ID: HRGMv2_1453_23_19
Type: TC
Location: 27891 - 29153 (+)
Type: TC
Location: 27891 - 29153 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp019414345
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.