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Cluster: HRGMv2_1453_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1453_28 HRGMv2_1453_28_15 15820 16263 + 4.A.6.1.16
pfam HRGMv2_1453_28 HRGMv2_1453_28_16 16263 16544 + YajC
TC HRGMv2_1453_28 HRGMv2_1453_28_17 16581 17063 + 4.A.6.1.4
TC HRGMv2_1453_28 HRGMv2_1453_28_18 17154 17954 + 4.A.6.1.4
TC HRGMv2_1453_28 HRGMv2_1453_28_19 17944 19026 + 4.A.6.1.4
TF HRGMv2_1453_28 HRGMv2_1453_28_20 19212 19943 + GntR
STP HRGMv2_1453_28 HRGMv2_1453_28_21 20058 21224 + SIS | SIS
CAZyme HRGMv2_1453_28 HRGMv2_1453_28_22 21342 22511 + CE9
Gene ID: HRGMv2_1453_28_15
Type: TC
Location: 15820 - 16263 (+)
Gene ID: HRGMv2_1453_28_16
Type: pfam
Location: 16263 - 16544 (+)
Gene ID: HRGMv2_1453_28_17
Type: TC
Location: 16581 - 17063 (+)
Gene ID: HRGMv2_1453_28_18
Type: TC
Location: 17154 - 17954 (+)
Gene ID: HRGMv2_1453_28_19
Type: TC
Location: 17944 - 19026 (+)
Gene ID: HRGMv2_1453_28_20
Type: TF
Location: 19212 - 19943 (+)
Gene ID: HRGMv2_1453_28_21
Type: STP
Location: 20058 - 21224 (+)
Gene ID: HRGMv2_1453_28_22
Type: CAZyme
Location: 21342 - 22511 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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