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Cluster: HRGMv2_1451_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1451_10 HRGMv2_1451_10_20 18605 19390 - 3.A.1.3.20
TC HRGMv2_1451_10 HRGMv2_1451_10_21 19413 20561 - 3.A.1.3.20
TC HRGMv2_1451_10 HRGMv2_1451_10_22 20571 21497 - 3.A.1.3.20
pfam HRGMv2_1451_10 HRGMv2_1451_10_23 21826 22719 - Aldose_epim
NULL(UNKNOWN) HRGMv2_1451_10 HRGMv2_1451_10_24 22799 23668 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1451_10 HRGMv2_1451_10_25 23929 25164 + 2.A.1.2.25
TC HRGMv2_1451_10 HRGMv2_1451_10_26 25393 26955 - 4.A.1.1.3
CAZyme HRGMv2_1451_10 HRGMv2_1451_10_27 27038 28363 - GH4
Gene ID: HRGMv2_1451_10_20
Type: TC
Location: 18605 - 19390 (-)
Gene ID: HRGMv2_1451_10_21
Type: TC
Location: 19413 - 20561 (-)
Gene ID: HRGMv2_1451_10_22
Type: TC
Location: 20571 - 21497 (-)
Gene ID: HRGMv2_1451_10_23
Type: pfam
Location: 21826 - 22719 (-)
Gene ID: HRGMv2_1451_10_24
Type:
Location: 22799 - 23668 (-)
Gene ID: HRGMv2_1451_10_25
Type: TC
Location: 23929 - 25164 (+)
Gene ID: HRGMv2_1451_10_26
Type: TC
Location: 25393 - 26955 (-)
Gene ID: HRGMv2_1451_10_27
Type: CAZyme
Location: 27038 - 28363 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1451_10_20 vegetarian > vegan 1.06004 0.00181

🧭 Explore Read Mapping of CGC

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