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Cluster: HRGMv2_1451_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1451_58 HRGMv2_1451_58_33 38395 39564 - CE9
STP HRGMv2_1451_58 HRGMv2_1451_58_34 39683 40849 - SIS | SIS
TF HRGMv2_1451_58 HRGMv2_1451_58_35 40964 41695 - GntR
TC HRGMv2_1451_58 HRGMv2_1451_58_36 41881 42963 - 4.A.6.1.4
TC HRGMv2_1451_58 HRGMv2_1451_58_37 42953 43753 - 4.A.6.1.4
TC HRGMv2_1451_58 HRGMv2_1451_58_38 43844 44326 - 4.A.6.1.4
pfam HRGMv2_1451_58 HRGMv2_1451_58_39 44363 44644 - YajC
TC HRGMv2_1451_58 HRGMv2_1451_58_40 44644 45087 - 4.A.6.1.16
Gene ID: HRGMv2_1451_58_33
Type: CAZyme
Location: 38395 - 39564 (-)
Gene ID: HRGMv2_1451_58_34
Type: STP
Location: 39683 - 40849 (-)
Gene ID: HRGMv2_1451_58_35
Type: TF
Location: 40964 - 41695 (-)
Gene ID: HRGMv2_1451_58_36
Type: TC
Location: 41881 - 42963 (-)
Gene ID: HRGMv2_1451_58_37
Type: TC
Location: 42953 - 43753 (-)
Gene ID: HRGMv2_1451_58_38
Type: TC
Location: 43844 - 44326 (-)
Gene ID: HRGMv2_1451_58_39
Type: pfam
Location: 44363 - 44644 (-)
Gene ID: HRGMv2_1451_58_40
Type: TC
Location: 44644 - 45087 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1451_58_39 vegan > omnivore 1.09066 0.00566

🧭 Explore Read Mapping of CGC

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