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Cluster: HRGMv2_1450_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1450_7 HRGMv2_1450_7_163 185357 186526 - CE9
STP HRGMv2_1450_7 HRGMv2_1450_7_164 186644 187810 - SIS | SIS
TF HRGMv2_1450_7 HRGMv2_1450_7_165 187925 188656 - GntR
TC HRGMv2_1450_7 HRGMv2_1450_7_166 188842 189924 - 4.A.6.1.4
TC HRGMv2_1450_7 HRGMv2_1450_7_167 189914 190714 - 4.A.6.1.4
TC HRGMv2_1450_7 HRGMv2_1450_7_168 190805 191287 - 4.A.6.1.4
pfam HRGMv2_1450_7 HRGMv2_1450_7_169 191324 191605 - YajC
TC HRGMv2_1450_7 HRGMv2_1450_7_170 191605 192048 - 4.A.6.1.16
Gene ID: HRGMv2_1450_7_163
Type: CAZyme
Location: 185357 - 186526 (-)
Gene ID: HRGMv2_1450_7_164
Type: STP
Location: 186644 - 187810 (-)
Gene ID: HRGMv2_1450_7_165
Type: TF
Location: 187925 - 188656 (-)
Gene ID: HRGMv2_1450_7_166
Type: TC
Location: 188842 - 189924 (-)
Gene ID: HRGMv2_1450_7_167
Type: TC
Location: 189914 - 190714 (-)
Gene ID: HRGMv2_1450_7_168
Type: TC
Location: 190805 - 191287 (-)
Gene ID: HRGMv2_1450_7_169
Type: pfam
Location: 191324 - 191605 (-)
Gene ID: HRGMv2_1450_7_170
Type: TC
Location: 191605 - 192048 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1450_7_169 vegan > omnivore 1.00823 0.00701

🧭 Explore Read Mapping of CGC

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