Cluster: HRGMv2_1450_CGC16
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1450
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1450_31 | HRGMv2_1450_31_140 | 172041 | 174368 | - | 9.A.8.1.6 |
| TC | HRGMv2_1450_31 | HRGMv2_1450_31_141 | 174492 | 174713 | - | 9.A.8.1.6 |
| STP | HRGMv2_1450_31 | HRGMv2_1450_31_142 | 174753 | 174995 | - | FeoA |
| STP | HRGMv2_1450_31 | HRGMv2_1450_31_143 | 175181 | 175429 | - | PTS-HPr |
| TC | HRGMv2_1450_31 | HRGMv2_1450_31_144 | 175851 | 177314 | - | 2.A.3.7.4 |
| NULL(UNKNOWN) | HRGMv2_1450_31 | HRGMv2_1450_31_145 | 177468 | 177923 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1450_31 | HRGMv2_1450_31_146 | 177927 | 180935 | - | GH2 |
Gene ID: HRGMv2_1450_31_140
Type: TC
Location: 172041 - 174368 (-)
Type: TC
Location: 172041 - 174368 (-)
Gene ID: HRGMv2_1450_31_141
Type: TC
Location: 174492 - 174713 (-)
Type: TC
Location: 174492 - 174713 (-)
Gene ID: HRGMv2_1450_31_142
Type: STP
Location: 174753 - 174995 (-)
Type: STP
Location: 174753 - 174995 (-)
Gene ID: HRGMv2_1450_31_143
Type: STP
Location: 175181 - 175429 (-)
Type: STP
Location: 175181 - 175429 (-)
Gene ID: HRGMv2_1450_31_144
Type: TC
Location: 175851 - 177314 (-)
Type: TC
Location: 175851 - 177314 (-)
Gene ID: HRGMv2_1450_31_145
Type:
Location: 177468 - 177923 (-)
Type:
Location: 177468 - 177923 (-)
Gene ID: HRGMv2_1450_31_146
Type: CAZyme
Location: 177927 - 180935 (-)
Type: CAZyme
Location: 177927 - 180935 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp019414565
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.