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Cluster: HRGMv2_1450_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1450_19 HRGMv2_1450_19_11 11762 13225 + 2.A.3.2.3
NULL(UNKNOWN) HRGMv2_1450_19 HRGMv2_1450_19_12 13688 14008 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1450_19 HRGMv2_1450_19_13 14130 16490 + 9.A.8.1.6
TC HRGMv2_1450_19 HRGMv2_1450_19_14 16805 18469 + 4.A.1.1.3
TF HRGMv2_1450_19 HRGMv2_1450_19_15 18532 19284 - HTH_6
CAZyme HRGMv2_1450_19 HRGMv2_1450_19_16 19460 20833 + GH4
NULL(UNKNOWN) HRGMv2_1450_19 HRGMv2_1450_19_17 20999 21751 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1450_19 HRGMv2_1450_19_18 21927 23123 + 2.A.1.2.18
CAZyme HRGMv2_1450_19 HRGMv2_1450_19_19 23277 24653 + GH13_20
Gene ID: HRGMv2_1450_19_11
Type: TC
Location: 11762 - 13225 (+)
Gene ID: HRGMv2_1450_19_12
Type:
Location: 13688 - 14008 (+)
Gene ID: HRGMv2_1450_19_13
Type: TC
Location: 14130 - 16490 (+)
Gene ID: HRGMv2_1450_19_14
Type: TC
Location: 16805 - 18469 (+)
Gene ID: HRGMv2_1450_19_15
Type: TF
Location: 18532 - 19284 (-)
Gene ID: HRGMv2_1450_19_16
Type: CAZyme
Location: 19460 - 20833 (+)
Gene ID: HRGMv2_1450_19_17
Type:
Location: 20999 - 21751 (+)
Gene ID: HRGMv2_1450_19_18
Type: TC
Location: 21927 - 23123 (+)
Gene ID: HRGMv2_1450_19_19
Type: CAZyme
Location: 23277 - 24653 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1450_19_11 vegan > omnivore 1.54091 0.00701
HRGMv2_1450_19_16 vegan > omnivore 1.48363 0.00701
HRGMv2_1450_19_17 vegan > omnivore 1.59746 0.00701

🧭 Explore Read Mapping of CGC

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