dbCAN Logo

Cluster: HRGMv2_1449_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1449_11 HRGMv2_1449_11_27 34998 35336 - 4.A.3.1.2
TF HRGMv2_1449_11 HRGMv2_1449_11_28 35552 36556 - LacI
TC HRGMv2_1449_11 HRGMv2_1449_11_29 36914 38689 + 4.A.3.1.1
CAZyme HRGMv2_1449_11 HRGMv2_1449_11_30 38756 40195 + GH1
TF HRGMv2_1449_11 HRGMv2_1449_11_31 40472 41509 - LacI
CAZyme HRGMv2_1449_11 HRGMv2_1449_11_32 41851 43293 + GH1
TC HRGMv2_1449_11 HRGMv2_1449_11_33 43780 45228 + 4.A.3.1.1
TF HRGMv2_1449_11 HRGMv2_1449_11_34 45642 46652 - LacI
TC HRGMv2_1449_11 HRGMv2_1449_11_35 46927 48705 + 4.A.3.1.1
CAZyme HRGMv2_1449_11 HRGMv2_1449_11_36 48782 50203 + GH1
Gene ID: HRGMv2_1449_11_27
Type: TC
Location: 34998 - 35336 (-)
Gene ID: HRGMv2_1449_11_28
Type: TF
Location: 35552 - 36556 (-)
Gene ID: HRGMv2_1449_11_29
Type: TC
Location: 36914 - 38689 (+)
Gene ID: HRGMv2_1449_11_30
Type: CAZyme
Location: 38756 - 40195 (+)
Gene ID: HRGMv2_1449_11_31
Type: TF
Location: 40472 - 41509 (-)
Gene ID: HRGMv2_1449_11_32
Type: CAZyme
Location: 41851 - 43293 (+)
Gene ID: HRGMv2_1449_11_33
Type: TC
Location: 43780 - 45228 (+)
Gene ID: HRGMv2_1449_11_34
Type: TF
Location: 45642 - 46652 (-)
Gene ID: HRGMv2_1449_11_35
Type: TC
Location: 46927 - 48705 (+)
Gene ID: HRGMv2_1449_11_36
Type: CAZyme
Location: 48782 - 50203 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1449_11_31 vegetarian > omnivore 1.02737 0.01064

🧭 Explore Read Mapping of CGC

← Back to Cluster List