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Cluster: HRGMv2_1449_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1449_27 HRGMv2_1449_27_16 12485 13654 - CE9
STP HRGMv2_1449_27 HRGMv2_1449_27_17 13772 14938 - SIS | SIS
TF HRGMv2_1449_27 HRGMv2_1449_27_18 15053 15784 - GntR
TC HRGMv2_1449_27 HRGMv2_1449_27_19 15969 17051 - 4.A.6.1.4
TC HRGMv2_1449_27 HRGMv2_1449_27_20 17041 17841 - 4.A.6.1.4
TC HRGMv2_1449_27 HRGMv2_1449_27_21 17932 18414 - 4.A.6.1.4
pfam HRGMv2_1449_27 HRGMv2_1449_27_22 18451 18732 - YajC
TC HRGMv2_1449_27 HRGMv2_1449_27_23 18732 19175 - 4.A.6.1.16
Gene ID: HRGMv2_1449_27_16
Type: CAZyme
Location: 12485 - 13654 (-)
Gene ID: HRGMv2_1449_27_17
Type: STP
Location: 13772 - 14938 (-)
Gene ID: HRGMv2_1449_27_18
Type: TF
Location: 15053 - 15784 (-)
Gene ID: HRGMv2_1449_27_19
Type: TC
Location: 15969 - 17051 (-)
Gene ID: HRGMv2_1449_27_20
Type: TC
Location: 17041 - 17841 (-)
Gene ID: HRGMv2_1449_27_21
Type: TC
Location: 17932 - 18414 (-)
Gene ID: HRGMv2_1449_27_22
Type: pfam
Location: 18451 - 18732 (-)
Gene ID: HRGMv2_1449_27_23
Type: TC
Location: 18732 - 19175 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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