Cluster: HRGMv2_1447_CGC11
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1447
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1447_140 | HRGMv2_1447_140_12 | 15203 | 17530 | - | 9.A.8.1.6 |
| TC | HRGMv2_1447_140 | HRGMv2_1447_140_13 | 17654 | 17875 | - | 9.A.8.1.6 |
| STP | HRGMv2_1447_140 | HRGMv2_1447_140_14 | 17915 | 18157 | - | FeoA |
| STP | HRGMv2_1447_140 | HRGMv2_1447_140_15 | 18347 | 18595 | - | PTS-HPr |
| TC | HRGMv2_1447_140 | HRGMv2_1447_140_16 | 19017 | 20480 | - | 2.A.3.7.4 |
| NULL(UNKNOWN) | HRGMv2_1447_140 | HRGMv2_1447_140_17 | 20634 | 21089 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1447_140 | HRGMv2_1447_140_18 | 21093 | 24101 | - | GH2 |
Gene ID: HRGMv2_1447_140_12
Type: TC
Location: 15203 - 17530 (-)
Type: TC
Location: 15203 - 17530 (-)
Gene ID: HRGMv2_1447_140_13
Type: TC
Location: 17654 - 17875 (-)
Type: TC
Location: 17654 - 17875 (-)
Gene ID: HRGMv2_1447_140_14
Type: STP
Location: 17915 - 18157 (-)
Type: STP
Location: 17915 - 18157 (-)
Gene ID: HRGMv2_1447_140_15
Type: STP
Location: 18347 - 18595 (-)
Type: STP
Location: 18347 - 18595 (-)
Gene ID: HRGMv2_1447_140_16
Type: TC
Location: 19017 - 20480 (-)
Type: TC
Location: 19017 - 20480 (-)
Gene ID: HRGMv2_1447_140_17
Type:
Location: 20634 - 21089 (-)
Type:
Location: 20634 - 21089 (-)
Gene ID: HRGMv2_1447_140_18
Type: CAZyme
Location: 21093 - 24101 (-)
Type: CAZyme
Location: 21093 - 24101 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp019419405
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.