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Cluster: HRGMv2_1446_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1446_13 HRGMv2_1446_13_8 8597 9973 - GH13_20
TC HRGMv2_1446_13 HRGMv2_1446_13_9 10126 11322 - 2.A.1.2.18
TC HRGMv2_1446_13 HRGMv2_1446_13_10 11445 13805 - 9.A.8.1.6
NULL(UNKNOWN) HRGMv2_1446_13 HRGMv2_1446_13_11 13927 14247 - NULL(UNKNOWN)
[View Structural Homologs]
peptidase HRGMv2_1446_13 HRGMv2_1446_13_12 14295 15194 - S09.UPW
TC HRGMv2_1446_13 HRGMv2_1446_13_13 15437 16000 + 4.A.1.2.6
pfam HRGMv2_1446_13 HRGMv2_1446_13_14 16181 17584 + tRNA-synt_2 | tRNA_anti-codon
NULL(UNKNOWN) HRGMv2_1446_13 HRGMv2_1446_13_15 17834 18619 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1446_13 HRGMv2_1446_13_16 18780 19760 + 3.A.1.34.1
TC HRGMv2_1446_13 HRGMv2_1446_13_17 19964 20887 + 3.A.1.34.1
TC HRGMv2_1446_13 HRGMv2_1446_13_18 20880 21674 + 3.A.1.34.1
Gene ID: HRGMv2_1446_13_8
Type: CAZyme
Location: 8597 - 9973 (-)
Gene ID: HRGMv2_1446_13_9
Type: TC
Location: 10126 - 11322 (-)
Gene ID: HRGMv2_1446_13_10
Type: TC
Location: 11445 - 13805 (-)
Gene ID: HRGMv2_1446_13_11
Type:
Location: 13927 - 14247 (-)
Gene ID: HRGMv2_1446_13_12
Type: peptidase
Location: 14295 - 15194 (-)
Gene ID: HRGMv2_1446_13_13
Type: TC
Location: 15437 - 16000 (+)
Gene ID: HRGMv2_1446_13_14
Type: pfam
Location: 16181 - 17584 (+)
Gene ID: HRGMv2_1446_13_15
Type:
Location: 17834 - 18619 (+)
Gene ID: HRGMv2_1446_13_16
Type: TC
Location: 18780 - 19760 (+)
Gene ID: HRGMv2_1446_13_17
Type: TC
Location: 19964 - 20887 (+)
Gene ID: HRGMv2_1446_13_18
Type: TC
Location: 20880 - 21674 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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