dbCAN Logo

Cluster: HRGMv2_1446_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1446_8 HRGMv2_1446_8_35 36162 37331 - CE9
STP HRGMv2_1446_8 HRGMv2_1446_8_36 37449 38615 - SIS | SIS
TF HRGMv2_1446_8 HRGMv2_1446_8_37 38730 39461 - GntR
TC HRGMv2_1446_8 HRGMv2_1446_8_38 39647 40729 - 4.A.6.1.4
TC HRGMv2_1446_8 HRGMv2_1446_8_39 40719 41519 - 4.A.6.1.4
TC HRGMv2_1446_8 HRGMv2_1446_8_40 41610 42092 - 4.A.6.1.4
pfam HRGMv2_1446_8 HRGMv2_1446_8_41 42129 42410 - YajC
TC HRGMv2_1446_8 HRGMv2_1446_8_42 42410 42853 - 4.A.6.1.16
Gene ID: HRGMv2_1446_8_35
Type: CAZyme
Location: 36162 - 37331 (-)
Gene ID: HRGMv2_1446_8_36
Type: STP
Location: 37449 - 38615 (-)
Gene ID: HRGMv2_1446_8_37
Type: TF
Location: 38730 - 39461 (-)
Gene ID: HRGMv2_1446_8_38
Type: TC
Location: 39647 - 40729 (-)
Gene ID: HRGMv2_1446_8_39
Type: TC
Location: 40719 - 41519 (-)
Gene ID: HRGMv2_1446_8_40
Type: TC
Location: 41610 - 42092 (-)
Gene ID: HRGMv2_1446_8_41
Type: pfam
Location: 42129 - 42410 (-)
Gene ID: HRGMv2_1446_8_42
Type: TC
Location: 42410 - 42853 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1446_8_41 vegan > omnivore 1.09943 0.00551

🧭 Explore Read Mapping of CGC

← Back to Cluster List