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Cluster: HRGMv2_1446_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1446_6 HRGMv2_1446_6_30 30309 31709 + GH1
TC HRGMv2_1446_6 HRGMv2_1446_6_31 31830 33182 + 4.A.3.2.2
TC HRGMv2_1446_6 HRGMv2_1446_6_32 33336 33638 + 4.A.3.2.9
TC HRGMv2_1446_6 HRGMv2_1446_6_33 33648 33980 + 4.A.3.2.3
STP HRGMv2_1446_6 HRGMv2_1446_6_34 34222 35175 + Glucokinase
pfam HRGMv2_1446_6 HRGMv2_1446_6_35 35323 36246 + DHH | DHHA2
TC HRGMv2_1446_6 HRGMv2_1446_6_36 36514 37872 + 2.A.33.1.1
Gene ID: HRGMv2_1446_6_30
Type: CAZyme
Location: 30309 - 31709 (+)
Gene ID: HRGMv2_1446_6_31
Type: TC
Location: 31830 - 33182 (+)
Gene ID: HRGMv2_1446_6_32
Type: TC
Location: 33336 - 33638 (+)
Gene ID: HRGMv2_1446_6_33
Type: TC
Location: 33648 - 33980 (+)
Gene ID: HRGMv2_1446_6_34
Type: STP
Location: 34222 - 35175 (+)
Gene ID: HRGMv2_1446_6_35
Type: pfam
Location: 35323 - 36246 (+)
Gene ID: HRGMv2_1446_6_36
Type: TC
Location: 36514 - 37872 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1446_6_32 vegan > omnivore 1.01187 0.00551

🧭 Explore Read Mapping of CGC

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