Cluster: HRGMv2_1446_CGC11
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1446
- CGC Family ID: CGCFAM_00413
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1446_20 | HRGMv2_1446_20_2 | 1053 | 3821 | + | 3.A.3.4.1 |
| CAZyme | HRGMv2_1446_20 | HRGMv2_1446_20_3 | 4011 | 5324 | - | GH140 |
| TC | HRGMv2_1446_20 | HRGMv2_1446_20_4 | 5535 | 6962 | - | 4.A.1.2.11 |
| peptidase | HRGMv2_1446_20 | HRGMv2_1446_20_5 | 7453 | 8790 | + | S09.UPW |
| pfam | HRGMv2_1446_20 | HRGMv2_1446_20_6 | 9058 | 10569 | + | Sde182_NH-like |
| TC | HRGMv2_1446_20 | HRGMv2_1446_20_7 | 10872 | 12293 | - | 4.A.1.2.3 |
Gene ID: HRGMv2_1446_20_2
Type: TC
Location: 1053 - 3821 (+)
Type: TC
Location: 1053 - 3821 (+)
Gene ID: HRGMv2_1446_20_3
Type: CAZyme
Location: 4011 - 5324 (-)
Type: CAZyme
Location: 4011 - 5324 (-)
Gene ID: HRGMv2_1446_20_4
Type: TC
Location: 5535 - 6962 (-)
Type: TC
Location: 5535 - 6962 (-)
Gene ID: HRGMv2_1446_20_5
Type: peptidase
Location: 7453 - 8790 (+)
Type: peptidase
Location: 7453 - 8790 (+)
Gene ID: HRGMv2_1446_20_6
Type: pfam
Location: 9058 - 10569 (+)
Type: pfam
Location: 9058 - 10569 (+)
Gene ID: HRGMv2_1446_20_7
Type: TC
Location: 10872 - 12293 (-)
Type: TC
Location: 10872 - 12293 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp019425005
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.