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Cluster: HRGMv2_1446_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1446_1 HRGMv2_1446_1_19 18470 19255 - 3.A.1.3.20
TC HRGMv2_1446_1 HRGMv2_1446_1_20 19278 20426 - 3.A.1.3.20
TC HRGMv2_1446_1 HRGMv2_1446_1_21 20436 21362 - 3.A.1.3.20
pfam HRGMv2_1446_1 HRGMv2_1446_1_22 21620 22513 - Aldose_epim
NULL(UNKNOWN) HRGMv2_1446_1 HRGMv2_1446_1_23 22627 23496 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1446_1 HRGMv2_1446_1_24 23757 24986 + 2.A.1.2.25
CAZyme HRGMv2_1446_1 HRGMv2_1446_1_25 25223 26548 + GH4
TC HRGMv2_1446_1 HRGMv2_1446_1_26 26573 28153 + 4.A.1.1.14
TF HRGMv2_1446_1 HRGMv2_1446_1_27 28231 29031 + HTH_6
TC HRGMv2_1446_1 HRGMv2_1446_1_28 29224 30786 - 4.A.1.1.3
CAZyme HRGMv2_1446_1 HRGMv2_1446_1_29 30869 32194 - GH4
TF HRGMv2_1446_1 HRGMv2_1446_1_30 32493 33242 + HTH_6
TC HRGMv2_1446_1 HRGMv2_1446_1_31 34067 35605 + 3.A.1.121.3
Gene ID: HRGMv2_1446_1_19
Type: TC
Location: 18470 - 19255 (-)
Gene ID: HRGMv2_1446_1_20
Type: TC
Location: 19278 - 20426 (-)
Gene ID: HRGMv2_1446_1_21
Type: TC
Location: 20436 - 21362 (-)
Gene ID: HRGMv2_1446_1_22
Type: pfam
Location: 21620 - 22513 (-)
Gene ID: HRGMv2_1446_1_23
Type:
Location: 22627 - 23496 (-)
Gene ID: HRGMv2_1446_1_24
Type: TC
Location: 23757 - 24986 (+)
Gene ID: HRGMv2_1446_1_25
Type: CAZyme
Location: 25223 - 26548 (+)
Gene ID: HRGMv2_1446_1_26
Type: TC
Location: 26573 - 28153 (+)
Gene ID: HRGMv2_1446_1_27
Type: TF
Location: 28231 - 29031 (+)
Gene ID: HRGMv2_1446_1_28
Type: TC
Location: 29224 - 30786 (-)
Gene ID: HRGMv2_1446_1_29
Type: CAZyme
Location: 30869 - 32194 (-)
Gene ID: HRGMv2_1446_1_30
Type: TF
Location: 32493 - 33242 (+)
Gene ID: HRGMv2_1446_1_31
Type: TC
Location: 34067 - 35605 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1446_1_19 vegetarian > vegan 1.02486 0.00290

🧭 Explore Read Mapping of CGC

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