dbCAN HGM

Cluster: HRGMv2_1445_CGC9

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
CAZyme	HRGMv2_1445_14	HRGMv2_1445_14_9	10412	11788	-	GH13_20
TC	HRGMv2_1445_14	HRGMv2_1445_14_10	11942	13138	-	2.A.1.2.18
TC	HRGMv2_1445_14	HRGMv2_1445_14_11	13263	15623	-	9.A.8.1.6
NULL(UNKNOWN)	HRGMv2_1445_14	HRGMv2_1445_14_12	15745	16065	-	NULL(UNKNOWN) [View Structural Homologs]
peptidase	HRGMv2_1445_14	HRGMv2_1445_14_13	16113	17012	-	S09.UPW
TC	HRGMv2_1445_14	HRGMv2_1445_14_14	17181	17822	+	4.A.1.2.6
TC	HRGMv2_1445_14	HRGMv2_1445_14_15	18058	19992	+	9.B.97.5.1
pfam	HRGMv2_1445_14	HRGMv2_1445_14_16	20129	21532	+	tRNA-synt_2 \| tRNA_anti-codon
NULL(UNKNOWN)	HRGMv2_1445_14	HRGMv2_1445_14_17	21782	22567	+	NULL(UNKNOWN) [View Structural Homologs]
TC	HRGMv2_1445_14	HRGMv2_1445_14_18	22728	23708	+	3.A.1.34.1
TC	HRGMv2_1445_14	HRGMv2_1445_14_19	23913	24836	+	3.A.1.34.1
TC	HRGMv2_1445_14	HRGMv2_1445_14_20	24829	25623	+	3.A.1.34.1
pfam	HRGMv2_1445_14	HRGMv2_1445_14_21	25818	27845	+	Metallophos \| 5_nucleotid_C
TC	HRGMv2_1445_14	HRGMv2_1445_14_22	27974	28741	+	1.A.23.4.10

Gene ID: HRGMv2_1445_14_9
Type: CAZyme
Location: 10412 - 11788 (-)

Gene ID: HRGMv2_1445_14_10
Type: TC
Location: 11942 - 13138 (-)

Gene ID: HRGMv2_1445_14_11
Type: TC
Location: 13263 - 15623 (-)

Gene ID: HRGMv2_1445_14_12
Type:
Location: 15745 - 16065 (-)

Gene ID: HRGMv2_1445_14_13
Type: peptidase
Location: 16113 - 17012 (-)

Gene ID: HRGMv2_1445_14_14
Type: TC
Location: 17181 - 17822 (+)

Gene ID: HRGMv2_1445_14_15
Type: TC
Location: 18058 - 19992 (+)

Gene ID: HRGMv2_1445_14_16
Type: pfam
Location: 20129 - 21532 (+)

Gene ID: HRGMv2_1445_14_17
Type:
Location: 21782 - 22567 (+)

Gene ID: HRGMv2_1445_14_18
Type: TC
Location: 22728 - 23708 (+)

Gene ID: HRGMv2_1445_14_19
Type: TC
Location: 23913 - 24836 (+)

Gene ID: HRGMv2_1445_14_20
Type: TC
Location: 24829 - 25623 (+)

Gene ID: HRGMv2_1445_14_21
Type: pfam
Location: 25818 - 27845 (+)

Gene ID: HRGMv2_1445_14_22
Type: TC
Location: 27974 - 28741 (+)

Taxonomic Lineage

Domain

→

Phylum

→

Class

→

Order

→

Family

→

Genus

→

Species

Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_1445_14_15	vegan > omnivore	1.34287	0.00701
HRGMv2_1445_14_15	vegetarian > omnivore	1.51558	0.02743
HRGMv2_1445_14_21	vegan > omnivore	1.85972	0.00701
HRGMv2_1445_14_21	vegetarian > omnivore	1.39689	0.01287