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Cluster: HRGMv2_1445_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1445_13 HRGMv2_1445_13_1 321 764 + 4.A.6.1.16
pfam HRGMv2_1445_13 HRGMv2_1445_13_2 764 1045 + YajC
TC HRGMv2_1445_13 HRGMv2_1445_13_3 1082 1564 + 4.A.6.1.4
TC HRGMv2_1445_13 HRGMv2_1445_13_4 1655 2455 + 4.A.6.1.4
TC HRGMv2_1445_13 HRGMv2_1445_13_5 2445 3527 + 4.A.6.1.4
TF HRGMv2_1445_13 HRGMv2_1445_13_6 3712 4443 + GntR
STP HRGMv2_1445_13 HRGMv2_1445_13_7 4558 5724 + SIS | SIS
CAZyme HRGMv2_1445_13 HRGMv2_1445_13_8 5843 7012 + CE9
Gene ID: HRGMv2_1445_13_1
Type: TC
Location: 321 - 764 (+)
Gene ID: HRGMv2_1445_13_2
Type: pfam
Location: 764 - 1045 (+)
Gene ID: HRGMv2_1445_13_3
Type: TC
Location: 1082 - 1564 (+)
Gene ID: HRGMv2_1445_13_4
Type: TC
Location: 1655 - 2455 (+)
Gene ID: HRGMv2_1445_13_5
Type: TC
Location: 2445 - 3527 (+)
Gene ID: HRGMv2_1445_13_6
Type: TF
Location: 3712 - 4443 (+)
Gene ID: HRGMv2_1445_13_7
Type: STP
Location: 4558 - 5724 (+)
Gene ID: HRGMv2_1445_13_8
Type: CAZyme
Location: 5843 - 7012 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1445_13_2 vegan > omnivore 1.02369 0.00701

🧭 Explore Read Mapping of CGC

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