Cluster: HRGMv2_1445_CGC14
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1445
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1445_33 | HRGMv2_1445_33_13 | 10392 | 11411 | + | GH109 |
| pfam | HRGMv2_1445_33 | HRGMv2_1445_33_14 | 11564 | 12430 | + | AP_endonuc_2 |
| TC | HRGMv2_1445_33 | HRGMv2_1445_33_15 | 12578 | 13438 | + | 3.A.1.3.15 |
| TC | HRGMv2_1445_33 | HRGMv2_1445_33_16 | 13557 | 14918 | + | 3.A.1.3.16 |
| TC | HRGMv2_1445_33 | HRGMv2_1445_33_17 | 14931 | 15683 | + | 3.A.1.3.20 |
Gene ID: HRGMv2_1445_33_13
Type: CAZyme
Location: 10392 - 11411 (+)
Type: CAZyme
Location: 10392 - 11411 (+)
Gene ID: HRGMv2_1445_33_14
Type: pfam
Location: 11564 - 12430 (+)
Type: pfam
Location: 11564 - 12430 (+)
Gene ID: HRGMv2_1445_33_15
Type: TC
Location: 12578 - 13438 (+)
Type: TC
Location: 12578 - 13438 (+)
Gene ID: HRGMv2_1445_33_16
Type: TC
Location: 13557 - 14918 (+)
Type: TC
Location: 13557 - 14918 (+)
Gene ID: HRGMv2_1445_33_17
Type: TC
Location: 14931 - 15683 (+)
Type: TC
Location: 14931 - 15683 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp019419645
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.