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Cluster: HRGMv2_1444_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1444_3 HRGMv2_1444_3_2 1900 2667 - 1.A.23.4.2
TC HRGMv2_1444_3 HRGMv2_1444_3_3 2875 3669 - 3.A.1.34.1
TC HRGMv2_1444_3 HRGMv2_1444_3_4 3662 4585 - 3.A.1.34.1
TC HRGMv2_1444_3 HRGMv2_1444_3_5 4790 5770 - 3.A.1.34.1
NULL(UNKNOWN) HRGMv2_1444_3 HRGMv2_1444_3_6 5931 6716 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1444_3 HRGMv2_1444_3_7 6975 8378 - tRNA-synt_2 | tRNA_anti-codon
TC HRGMv2_1444_3 HRGMv2_1444_3_8 8559 9122 - 4.A.1.2.6
peptidase HRGMv2_1444_3 HRGMv2_1444_3_9 9366 10268 + S09.UPW
TC HRGMv2_1444_3 HRGMv2_1444_3_10 10614 12974 + 9.A.8.1.6
TC HRGMv2_1444_3 HRGMv2_1444_3_11 13096 14292 + 2.A.1.2.18
CAZyme HRGMv2_1444_3 HRGMv2_1444_3_12 14445 15821 + GH13_20
Gene ID: HRGMv2_1444_3_2
Type: TC
Location: 1900 - 2667 (-)
Gene ID: HRGMv2_1444_3_3
Type: TC
Location: 2875 - 3669 (-)
Gene ID: HRGMv2_1444_3_4
Type: TC
Location: 3662 - 4585 (-)
Gene ID: HRGMv2_1444_3_5
Type: TC
Location: 4790 - 5770 (-)
Gene ID: HRGMv2_1444_3_6
Type:
Location: 5931 - 6716 (-)
Gene ID: HRGMv2_1444_3_7
Type: pfam
Location: 6975 - 8378 (-)
Gene ID: HRGMv2_1444_3_8
Type: TC
Location: 8559 - 9122 (-)
Gene ID: HRGMv2_1444_3_9
Type: peptidase
Location: 9366 - 10268 (+)
Gene ID: HRGMv2_1444_3_10
Type: TC
Location: 10614 - 12974 (+)
Gene ID: HRGMv2_1444_3_11
Type: TC
Location: 13096 - 14292 (+)
Gene ID: HRGMv2_1444_3_12
Type: CAZyme
Location: 14445 - 15821 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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