Cluster: HRGMv2_1444_CGC12
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1444
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1444_26 | HRGMv2_1444_26_25 | 21444 | 22121 | + | 4.A.6.1.5 |
| sulfatase | HRGMv2_1444_26 | HRGMv2_1444_26_26 | 22448 | 23500 | - | S1_4 |
| TF | HRGMv2_1444_26 | HRGMv2_1444_26_27 | 23707 | 24471 | + | HTH_DeoR |
| CAZyme | HRGMv2_1444_26 | HRGMv2_1444_26_28 | 24984 | 26405 | - | GH1 |
| TC | HRGMv2_1444_26 | HRGMv2_1444_26_29 | 26481 | 27008 | - | 4.A.3.1.1 |
Gene ID: HRGMv2_1444_26_25
Type: TC
Location: 21444 - 22121 (+)
Type: TC
Location: 21444 - 22121 (+)
Gene ID: HRGMv2_1444_26_26
Type: sulfatase
Location: 22448 - 23500 (-)
Type: sulfatase
Location: 22448 - 23500 (-)
Gene ID: HRGMv2_1444_26_27
Type: TF
Location: 23707 - 24471 (+)
Type: TF
Location: 23707 - 24471 (+)
Gene ID: HRGMv2_1444_26_28
Type: CAZyme
Location: 24984 - 26405 (-)
Type: CAZyme
Location: 24984 - 26405 (-)
Gene ID: HRGMv2_1444_26_29
Type: TC
Location: 26481 - 27008 (-)
Type: TC
Location: 26481 - 27008 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp019425045
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.