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Cluster: HRGMv2_1444_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1444_26 HRGMv2_1444_26_11 9915 10358 + 4.A.6.1.16
pfam HRGMv2_1444_26 HRGMv2_1444_26_12 10358 10639 + YajC
TC HRGMv2_1444_26 HRGMv2_1444_26_13 10676 11158 + 4.A.6.1.4
TC HRGMv2_1444_26 HRGMv2_1444_26_14 11249 12049 + 4.A.6.1.4
TC HRGMv2_1444_26 HRGMv2_1444_26_15 12039 13121 + 4.A.6.1.4
TF HRGMv2_1444_26 HRGMv2_1444_26_16 13306 14037 + GntR
STP HRGMv2_1444_26 HRGMv2_1444_26_17 14152 15318 + SIS | SIS
CAZyme HRGMv2_1444_26 HRGMv2_1444_26_18 15436 16605 + CE9
Gene ID: HRGMv2_1444_26_11
Type: TC
Location: 9915 - 10358 (+)
Gene ID: HRGMv2_1444_26_12
Type: pfam
Location: 10358 - 10639 (+)
Gene ID: HRGMv2_1444_26_13
Type: TC
Location: 10676 - 11158 (+)
Gene ID: HRGMv2_1444_26_14
Type: TC
Location: 11249 - 12049 (+)
Gene ID: HRGMv2_1444_26_15
Type: TC
Location: 12039 - 13121 (+)
Gene ID: HRGMv2_1444_26_16
Type: TF
Location: 13306 - 14037 (+)
Gene ID: HRGMv2_1444_26_17
Type: STP
Location: 14152 - 15318 (+)
Gene ID: HRGMv2_1444_26_18
Type: CAZyme
Location: 15436 - 16605 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1444_26_12 vegan > omnivore 1.18207 0.00566

🧭 Explore Read Mapping of CGC

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