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Cluster: HRGMv2_1444_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1444_22 HRGMv2_1444_22_11 15056 17506 - 4.A.1.1.8
TF HRGMv2_1444_22 HRGMv2_1444_22_12 17736 18455 + GntR
TC HRGMv2_1444_22 HRGMv2_1444_22_13 18763 20079 + 3.A.1.1.45
TC HRGMv2_1444_22 HRGMv2_1444_22_14 20167 21021 + 3.A.1.1.45
TC HRGMv2_1444_22 HRGMv2_1444_22_15 21021 21860 + 3.A.1.1.45
TC HRGMv2_1444_22 HRGMv2_1444_22_16 21929 23128 + 3.A.1.1.22
CAZyme HRGMv2_1444_22 HRGMv2_1444_22_17 23585 25852 - GT35
CAZyme HRGMv2_1444_22 HRGMv2_1444_22_18 25981 27486 - GH77
Gene ID: HRGMv2_1444_22_11
Type: TC
Location: 15056 - 17506 (-)
Gene ID: HRGMv2_1444_22_12
Type: TF
Location: 17736 - 18455 (+)
Gene ID: HRGMv2_1444_22_13
Type: TC
Location: 18763 - 20079 (+)
Gene ID: HRGMv2_1444_22_14
Type: TC
Location: 20167 - 21021 (+)
Gene ID: HRGMv2_1444_22_15
Type: TC
Location: 21021 - 21860 (+)
Gene ID: HRGMv2_1444_22_16
Type: TC
Location: 21929 - 23128 (+)
Gene ID: HRGMv2_1444_22_17
Type: CAZyme
Location: 23585 - 25852 (-)
Gene ID: HRGMv2_1444_22_18
Type: CAZyme
Location: 25981 - 27486 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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