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Cluster: HRGMv2_1443_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1443_4 HRGMv2_1443_4_4 3187 4017 - 3.A.1.132.3
pfam HRGMv2_1443_4 HRGMv2_1443_4_5 4279 7158 + UvrA_DNA-bind | UvrA_inter
pfam HRGMv2_1443_4 HRGMv2_1443_4_6 7292 7792 + tRNA_edit
TC HRGMv2_1443_4 HRGMv2_1443_4_7 7796 10099 + 2.A.66.4.4
pfam HRGMv2_1443_4 HRGMv2_1443_4_8 10106 12046 + GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC HRGMv2_1443_4 HRGMv2_1443_4_9 12412 14025 + 3.A.1.5.27
TC HRGMv2_1443_4 HRGMv2_1443_4_10 14183 15139 + 3.A.1.5.38
TC HRGMv2_1443_4 HRGMv2_1443_4_11 15143 17158 + 3.A.1.5.25
TC HRGMv2_1443_4 HRGMv2_1443_4_12 17159 17986 + 3.A.1.5.27
CAZyme HRGMv2_1443_4 HRGMv2_1443_4_13 18118 19044 + CE7
Gene ID: HRGMv2_1443_4_4
Type: TC
Location: 3187 - 4017 (-)
Gene ID: HRGMv2_1443_4_5
Type: pfam
Location: 4279 - 7158 (+)
Gene ID: HRGMv2_1443_4_6
Type: pfam
Location: 7292 - 7792 (+)
Gene ID: HRGMv2_1443_4_7
Type: TC
Location: 7796 - 10099 (+)
Gene ID: HRGMv2_1443_4_8
Type: pfam
Location: 10106 - 12046 (+)
Gene ID: HRGMv2_1443_4_9
Type: TC
Location: 12412 - 14025 (+)
Gene ID: HRGMv2_1443_4_10
Type: TC
Location: 14183 - 15139 (+)
Gene ID: HRGMv2_1443_4_11
Type: TC
Location: 15143 - 17158 (+)
Gene ID: HRGMv2_1443_4_12
Type: TC
Location: 17159 - 17986 (+)
Gene ID: HRGMv2_1443_4_13
Type: CAZyme
Location: 18118 - 19044 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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