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Cluster: HRGMv2_1443_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1443_18 HRGMv2_1443_18_13 12389 13456 - GT4
pfam HRGMv2_1443_18 HRGMv2_1443_18_14 13449 13976 - Hexapep | Hexapep_2
pfam HRGMv2_1443_18 HRGMv2_1443_18_15 13981 15198 - Epimerase | Polysacc_synt_C
TC HRGMv2_1443_18 HRGMv2_1443_18_16 15200 16258 - 9.B.18.2.1
CAZyme HRGMv2_1443_18 HRGMv2_1443_18_17 16259 17035 - GT26
TC HRGMv2_1443_18 HRGMv2_1443_18_18 17035 17784 - 9.B.18.1.2
Gene ID: HRGMv2_1443_18_13
Type: CAZyme
Location: 12389 - 13456 (-)
Gene ID: HRGMv2_1443_18_14
Type: pfam
Location: 13449 - 13976 (-)
Gene ID: HRGMv2_1443_18_15
Type: pfam
Location: 13981 - 15198 (-)
Gene ID: HRGMv2_1443_18_16
Type: TC
Location: 15200 - 16258 (-)
Gene ID: HRGMv2_1443_18_17
Type: CAZyme
Location: 16259 - 17035 (-)
Gene ID: HRGMv2_1443_18_18
Type: TC
Location: 17035 - 17784 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1443_18_15 vegetarian > omnivore 1.48638 0.02242
HRGMv2_1443_18_15 vegetarian > vegan 1.44591 0.02695

🧭 Explore Read Mapping of CGC

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