Cluster: HRGMv2_1443_CGC16
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_1443
- CGC Family ID: CGCFAM_00011
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1443_17 | HRGMv2_1443_17_11 | 11354 | 13357 | - | GT2 |
| CAZyme | HRGMv2_1443_17 | HRGMv2_1443_17_12 | 13590 | 14726 | + | GT2 |
| TC | HRGMv2_1443_17 | HRGMv2_1443_17_13 | 15087 | 15899 | + | 3.A.1.103.4 |
| TC | HRGMv2_1443_17 | HRGMv2_1443_17_14 | 15909 | 16664 | + | 3.A.1.103.1 |
| CAZyme | HRGMv2_1443_17 | HRGMv2_1443_17_15 | 16666 | 17922 | + | GT2 |
| CAZyme | HRGMv2_1443_17 | HRGMv2_1443_17_16 | 17962 | 19023 | + | GT2 |
| CAZyme | HRGMv2_1443_17 | HRGMv2_1443_17_17 | 19045 | 20280 | + | GT4 |
| NULL(UNKNOWN) | HRGMv2_1443_17 | HRGMv2_1443_17_18 | 20730 | 21593 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_1443_17 | HRGMv2_1443_17_19 | 21611 | 21925 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1443_17 | HRGMv2_1443_17_20 | 22123 | 23085 | - | GT81 |
| TC | HRGMv2_1443_17 | HRGMv2_1443_17_21 | 23226 | 24068 | + | 3.A.1.103.5 |
Gene ID: HRGMv2_1443_17_11
Type: CAZyme
Location: 11354 - 13357 (-)
Type: CAZyme
Location: 11354 - 13357 (-)
Gene ID: HRGMv2_1443_17_12
Type: CAZyme
Location: 13590 - 14726 (+)
Type: CAZyme
Location: 13590 - 14726 (+)
Gene ID: HRGMv2_1443_17_13
Type: TC
Location: 15087 - 15899 (+)
Type: TC
Location: 15087 - 15899 (+)
Gene ID: HRGMv2_1443_17_14
Type: TC
Location: 15909 - 16664 (+)
Type: TC
Location: 15909 - 16664 (+)
Gene ID: HRGMv2_1443_17_15
Type: CAZyme
Location: 16666 - 17922 (+)
Type: CAZyme
Location: 16666 - 17922 (+)
Gene ID: HRGMv2_1443_17_16
Type: CAZyme
Location: 17962 - 19023 (+)
Type: CAZyme
Location: 17962 - 19023 (+)
Gene ID: HRGMv2_1443_17_17
Type: CAZyme
Location: 19045 - 20280 (+)
Type: CAZyme
Location: 19045 - 20280 (+)
Gene ID: HRGMv2_1443_17_18
Type:
Location: 20730 - 21593 (-)
Type:
Location: 20730 - 21593 (-)
Gene ID: HRGMv2_1443_17_19
Type:
Location: 21611 - 21925 (-)
Type:
Location: 21611 - 21925 (-)
Gene ID: HRGMv2_1443_17_20
Type: CAZyme
Location: 22123 - 23085 (-)
Type: CAZyme
Location: 22123 - 23085 (-)
Gene ID: HRGMv2_1443_17_21
Type: TC
Location: 23226 - 24068 (+)
Type: TC
Location: 23226 - 24068 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp019414055
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1443_17_13 | vegetarian > vegan | 2.05230 | 0.02695 |
| HRGMv2_1443_17_14 | vegetarian > vegan | 1.15746 | 0.02695 |
| HRGMv2_1443_17_16 | vegetarian > vegan | 5.12698 | 0.02695 |
| HRGMv2_1443_17_17 | vegetarian > vegan | 3.30792 | 0.02695 |