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Cluster: HRGMv2_1443_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1443_12 HRGMv2_1443_12_33 40054 42924 + 2.A.103.1.7
TC HRGMv2_1443_12 HRGMv2_1443_12_34 43057 45006 + 9.B.106.2.2
pfam HRGMv2_1443_12 HRGMv2_1443_12_35 45307 46173 - rve | rve_2 | rve_3
NULL(UNKNOWN) HRGMv2_1443_12 HRGMv2_1443_12_36 46179 46433 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_1443_12 HRGMv2_1443_12_37 46693 52815 - GH84
CAZyme HRGMv2_1443_12 HRGMv2_1443_12_38 52859 57646 - CBM32 | CBM32 | CBM32 | GH20
CAZyme HRGMv2_1443_12 HRGMv2_1443_12_39 57743 63064 - GH2
pfam HRGMv2_1443_12 HRGMv2_1443_12_40 64339 64737 - DUF956
TC HRGMv2_1443_12 HRGMv2_1443_12_41 64858 65778 - 4.A.6.1.15
TC HRGMv2_1443_12 HRGMv2_1443_12_42 65795 66613 - 4.A.6.1.15
TC HRGMv2_1443_12 HRGMv2_1443_12_43 66632 67621 - 4.A.6.1.15
Gene ID: HRGMv2_1443_12_33
Type: TC
Location: 40054 - 42924 (+)
Gene ID: HRGMv2_1443_12_34
Type: TC
Location: 43057 - 45006 (+)
Gene ID: HRGMv2_1443_12_35
Type: pfam
Location: 45307 - 46173 (-)
Gene ID: HRGMv2_1443_12_36
Type:
Location: 46179 - 46433 (-)
Gene ID: HRGMv2_1443_12_37
Type: CAZyme
Location: 46693 - 52815 (-)
Gene ID: HRGMv2_1443_12_38
Type: CAZyme
Location: 52859 - 57646 (-)
Gene ID: HRGMv2_1443_12_39
Type: CAZyme
Location: 57743 - 63064 (-)
Gene ID: HRGMv2_1443_12_40
Type: pfam
Location: 64339 - 64737 (-)
Gene ID: HRGMv2_1443_12_41
Type: TC
Location: 64858 - 65778 (-)
Gene ID: HRGMv2_1443_12_42
Type: TC
Location: 65795 - 66613 (-)
Gene ID: HRGMv2_1443_12_43
Type: TC
Location: 66632 - 67621 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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