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Cluster: HRGMv2_1442_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1442_5 HRGMv2_1442_5_6 5574 8042 - 4.A.1.1.8
TF HRGMv2_1442_5 HRGMv2_1442_5_7 8252 8971 + GntR
TC HRGMv2_1442_5 HRGMv2_1442_5_8 9278 10594 + 3.A.1.1.45
TC HRGMv2_1442_5 HRGMv2_1442_5_9 10682 11536 + 3.A.1.1.45
TC HRGMv2_1442_5 HRGMv2_1442_5_10 11536 12375 + 3.A.1.1.45
TC HRGMv2_1442_5 HRGMv2_1442_5_11 12444 13643 + 3.A.1.1.22
CAZyme HRGMv2_1442_5 HRGMv2_1442_5_12 14100 16367 - GT35
CAZyme HRGMv2_1442_5 HRGMv2_1442_5_13 16496 18001 - GH77
Gene ID: HRGMv2_1442_5_6
Type: TC
Location: 5574 - 8042 (-)
Gene ID: HRGMv2_1442_5_7
Type: TF
Location: 8252 - 8971 (+)
Gene ID: HRGMv2_1442_5_8
Type: TC
Location: 9278 - 10594 (+)
Gene ID: HRGMv2_1442_5_9
Type: TC
Location: 10682 - 11536 (+)
Gene ID: HRGMv2_1442_5_10
Type: TC
Location: 11536 - 12375 (+)
Gene ID: HRGMv2_1442_5_11
Type: TC
Location: 12444 - 13643 (+)
Gene ID: HRGMv2_1442_5_12
Type: CAZyme
Location: 14100 - 16367 (-)
Gene ID: HRGMv2_1442_5_13
Type: CAZyme
Location: 16496 - 18001 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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