Cluster: HRGMv2_1442_CGC2
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1442
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1442_4 | HRGMv2_1442_4_34 | 32886 | 34244 | - | 2.A.33.1.1 |
| pfam | HRGMv2_1442_4 | HRGMv2_1442_4_35 | 34511 | 35434 | - | DHH | DHHA2 |
| STP | HRGMv2_1442_4 | HRGMv2_1442_4_36 | 35601 | 36554 | - | Glucokinase |
| TC | HRGMv2_1442_4 | HRGMv2_1442_4_37 | 36796 | 37128 | - | 4.A.3.2.3 |
| TC | HRGMv2_1442_4 | HRGMv2_1442_4_38 | 37138 | 37440 | - | 4.A.3.2.9 |
| TC | HRGMv2_1442_4 | HRGMv2_1442_4_39 | 37594 | 38946 | - | 4.A.3.2.2 |
| CAZyme | HRGMv2_1442_4 | HRGMv2_1442_4_40 | 39067 | 40467 | - | GH1 |
Gene ID: HRGMv2_1442_4_34
Type: TC
Location: 32886 - 34244 (-)
Type: TC
Location: 32886 - 34244 (-)
Gene ID: HRGMv2_1442_4_35
Type: pfam
Location: 34511 - 35434 (-)
Type: pfam
Location: 34511 - 35434 (-)
Gene ID: HRGMv2_1442_4_36
Type: STP
Location: 35601 - 36554 (-)
Type: STP
Location: 35601 - 36554 (-)
Gene ID: HRGMv2_1442_4_37
Type: TC
Location: 36796 - 37128 (-)
Type: TC
Location: 36796 - 37128 (-)
Gene ID: HRGMv2_1442_4_38
Type: TC
Location: 37138 - 37440 (-)
Type: TC
Location: 37138 - 37440 (-)
Gene ID: HRGMv2_1442_4_39
Type: TC
Location: 37594 - 38946 (-)
Type: TC
Location: 37594 - 38946 (-)
Gene ID: HRGMv2_1442_4_40
Type: CAZyme
Location: 39067 - 40467 (-)
Type: CAZyme
Location: 39067 - 40467 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1442_4_38 | vegan > omnivore | 1.07169 | 0.00701 |