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Cluster: HRGMv2_1442_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1442_4 HRGMv2_1442_4_4 2927 4096 - CE9
STP HRGMv2_1442_4 HRGMv2_1442_4_5 4214 5380 - SIS | SIS
TF HRGMv2_1442_4 HRGMv2_1442_4_6 5495 6226 - GntR
TC HRGMv2_1442_4 HRGMv2_1442_4_7 6411 7493 - 4.A.6.1.4
TC HRGMv2_1442_4 HRGMv2_1442_4_8 7483 8283 - 4.A.6.1.4
TC HRGMv2_1442_4 HRGMv2_1442_4_9 8374 8856 - 4.A.6.1.4
pfam HRGMv2_1442_4 HRGMv2_1442_4_10 8893 9174 - YajC
TC HRGMv2_1442_4 HRGMv2_1442_4_11 9174 9617 - 4.A.6.1.16
Gene ID: HRGMv2_1442_4_4
Type: CAZyme
Location: 2927 - 4096 (-)
Gene ID: HRGMv2_1442_4_5
Type: STP
Location: 4214 - 5380 (-)
Gene ID: HRGMv2_1442_4_6
Type: TF
Location: 5495 - 6226 (-)
Gene ID: HRGMv2_1442_4_7
Type: TC
Location: 6411 - 7493 (-)
Gene ID: HRGMv2_1442_4_8
Type: TC
Location: 7483 - 8283 (-)
Gene ID: HRGMv2_1442_4_9
Type: TC
Location: 8374 - 8856 (-)
Gene ID: HRGMv2_1442_4_10
Type: pfam
Location: 8893 - 9174 (-)
Gene ID: HRGMv2_1442_4_11
Type: TC
Location: 9174 - 9617 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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