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Cluster: HRGMv2_1441_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1441_69 HRGMv2_1441_69_72 79548 80717 - CE9
STP HRGMv2_1441_69 HRGMv2_1441_69_73 80836 82002 - SIS | SIS
TF HRGMv2_1441_69 HRGMv2_1441_69_74 82117 82848 - GntR
TC HRGMv2_1441_69 HRGMv2_1441_69_75 83033 84115 - 4.A.6.1.4
TC HRGMv2_1441_69 HRGMv2_1441_69_76 84105 84905 - 4.A.6.1.4
TC HRGMv2_1441_69 HRGMv2_1441_69_77 84996 85478 - 4.A.6.1.4
pfam HRGMv2_1441_69 HRGMv2_1441_69_78 85515 85796 - YajC
TC HRGMv2_1441_69 HRGMv2_1441_69_79 85796 86239 - 4.A.6.1.16
Gene ID: HRGMv2_1441_69_72
Type: CAZyme
Location: 79548 - 80717 (-)
Gene ID: HRGMv2_1441_69_73
Type: STP
Location: 80836 - 82002 (-)
Gene ID: HRGMv2_1441_69_74
Type: TF
Location: 82117 - 82848 (-)
Gene ID: HRGMv2_1441_69_75
Type: TC
Location: 83033 - 84115 (-)
Gene ID: HRGMv2_1441_69_76
Type: TC
Location: 84105 - 84905 (-)
Gene ID: HRGMv2_1441_69_77
Type: TC
Location: 84996 - 85478 (-)
Gene ID: HRGMv2_1441_69_78
Type: pfam
Location: 85515 - 85796 (-)
Gene ID: HRGMv2_1441_69_79
Type: TC
Location: 85796 - 86239 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1441_69_78 vegan > omnivore 1.08009 0.00701

🧭 Explore Read Mapping of CGC

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