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Cluster: HRGMv2_1441_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1441_57 HRGMv2_1441_57_47 50851 51645 - 3.A.1.34.1
TC HRGMv2_1441_57 HRGMv2_1441_57_48 51638 52561 - 3.A.1.34.1
TC HRGMv2_1441_57 HRGMv2_1441_57_49 52766 53746 - 3.A.1.34.1
NULL(UNKNOWN) HRGMv2_1441_57 HRGMv2_1441_57_50 53907 54692 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1441_57 HRGMv2_1441_57_51 54953 56356 - tRNA-synt_2 | tRNA_anti-codon
TC HRGMv2_1441_57 HRGMv2_1441_57_52 56538 57101 - 4.A.1.2.6
peptidase HRGMv2_1441_57 HRGMv2_1441_57_53 57348 58247 + S09.UPW
NULL(UNKNOWN) HRGMv2_1441_57 HRGMv2_1441_57_54 58295 58615 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1441_57 HRGMv2_1441_57_55 58737 61097 + 9.A.8.1.6
TC HRGMv2_1441_57 HRGMv2_1441_57_56 61219 62415 + 2.A.1.2.18
CAZyme HRGMv2_1441_57 HRGMv2_1441_57_57 62570 63799 + GH13_20
Gene ID: HRGMv2_1441_57_47
Type: TC
Location: 50851 - 51645 (-)
Gene ID: HRGMv2_1441_57_48
Type: TC
Location: 51638 - 52561 (-)
Gene ID: HRGMv2_1441_57_49
Type: TC
Location: 52766 - 53746 (-)
Gene ID: HRGMv2_1441_57_50
Type:
Location: 53907 - 54692 (-)
Gene ID: HRGMv2_1441_57_51
Type: pfam
Location: 54953 - 56356 (-)
Gene ID: HRGMv2_1441_57_52
Type: TC
Location: 56538 - 57101 (-)
Gene ID: HRGMv2_1441_57_53
Type: peptidase
Location: 57348 - 58247 (+)
Gene ID: HRGMv2_1441_57_54
Type:
Location: 58295 - 58615 (+)
Gene ID: HRGMv2_1441_57_55
Type: TC
Location: 58737 - 61097 (+)
Gene ID: HRGMv2_1441_57_56
Type: TC
Location: 61219 - 62415 (+)
Gene ID: HRGMv2_1441_57_57
Type: CAZyme
Location: 62570 - 63799 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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