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Cluster: HRGMv2_1440_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1440_19 HRGMv2_1440_19_14 12430 14124 + 4.A.3.1.1
pfam HRGMv2_1440_19 HRGMv2_1440_19_15 14485 14790 - ParE_toxin
NULL(UNKNOWN) HRGMv2_1440_19 HRGMv2_1440_19_16 14780 15046 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_1440_19 HRGMv2_1440_19_17 15423 16844 - GH1
TC HRGMv2_1440_19 HRGMv2_1440_19_18 16920 18698 - 4.A.3.1.1
TF HRGMv2_1440_19 HRGMv2_1440_19_19 18983 19984 + LacI
CAZyme HRGMv2_1440_19 HRGMv2_1440_19_20 20259 21698 - GH1
TC HRGMv2_1440_19 HRGMv2_1440_19_21 21765 23540 - 4.A.3.1.1
TF HRGMv2_1440_19 HRGMv2_1440_19_22 23898 24902 + LacI
TC HRGMv2_1440_19 HRGMv2_1440_19_23 25117 25455 + 4.A.3.1.2
Gene ID: HRGMv2_1440_19_14
Type: TC
Location: 12430 - 14124 (+)
Gene ID: HRGMv2_1440_19_15
Type: pfam
Location: 14485 - 14790 (-)
Gene ID: HRGMv2_1440_19_16
Type:
Location: 14780 - 15046 (-)
Gene ID: HRGMv2_1440_19_17
Type: CAZyme
Location: 15423 - 16844 (-)
Gene ID: HRGMv2_1440_19_18
Type: TC
Location: 16920 - 18698 (-)
Gene ID: HRGMv2_1440_19_19
Type: TF
Location: 18983 - 19984 (+)
Gene ID: HRGMv2_1440_19_20
Type: CAZyme
Location: 20259 - 21698 (-)
Gene ID: HRGMv2_1440_19_21
Type: TC
Location: 21765 - 23540 (-)
Gene ID: HRGMv2_1440_19_22
Type: TF
Location: 23898 - 24902 (+)
Gene ID: HRGMv2_1440_19_23
Type: TC
Location: 25117 - 25455 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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