Cluster: HRGMv2_1440_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1440
- CGC Family ID: CGCFAM_00154
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1440_4 | HRGMv2_1440_4_33 | 33041 | 33577 | - | 4.A.1.2.6 |
| pfam | HRGMv2_1440_4 | HRGMv2_1440_4_34 | 34153 | 35325 | + | Fic | Fic_N |
| STP | HRGMv2_1440_4 | HRGMv2_1440_4_35 | 35679 | 36359 | - | Pribosyltran |
| TC | HRGMv2_1440_4 | HRGMv2_1440_4_36 | 36796 | 39564 | + | 3.A.3.4.1 |
| pfam | HRGMv2_1440_4 | HRGMv2_1440_4_37 | 39936 | 41213 | + | AAA_14 | DUF4143 |
| CAZyme | HRGMv2_1440_4 | HRGMv2_1440_4_38 | 41311 | 42741 | - | GH1 |
Gene ID: HRGMv2_1440_4_33
Type: TC
Location: 33041 - 33577 (-)
Type: TC
Location: 33041 - 33577 (-)
Gene ID: HRGMv2_1440_4_34
Type: pfam
Location: 34153 - 35325 (+)
Type: pfam
Location: 34153 - 35325 (+)
Gene ID: HRGMv2_1440_4_35
Type: STP
Location: 35679 - 36359 (-)
Type: STP
Location: 35679 - 36359 (-)
Gene ID: HRGMv2_1440_4_36
Type: TC
Location: 36796 - 39564 (+)
Type: TC
Location: 36796 - 39564 (+)
Gene ID: HRGMv2_1440_4_37
Type: pfam
Location: 39936 - 41213 (+)
Type: pfam
Location: 39936 - 41213 (+)
Gene ID: HRGMv2_1440_4_38
Type: CAZyme
Location: 41311 - 42741 (-)
Type: CAZyme
Location: 41311 - 42741 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp019413955
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1440_4_37 | vegetarian > vegan | 1.43770 | 0.00313 |