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Cluster: HRGMv2_1440_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1440_45 HRGMv2_1440_45_7 5116 6492 - GH13_20
TC HRGMv2_1440_45 HRGMv2_1440_45_8 6646 7842 - 2.A.1.2.18
NULL(UNKNOWN) HRGMv2_1440_45 HRGMv2_1440_45_9 8018 8770 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_1440_45 HRGMv2_1440_45_10 8936 10309 - GH4
TF HRGMv2_1440_45 HRGMv2_1440_45_11 10485 11237 + HTH_6
TC HRGMv2_1440_45 HRGMv2_1440_45_12 11300 12973 - 4.A.1.1.3
TC HRGMv2_1440_45 HRGMv2_1440_45_13 13288 15666 - 9.A.8.1.6
Gene ID: HRGMv2_1440_45_7
Type: CAZyme
Location: 5116 - 6492 (-)
Gene ID: HRGMv2_1440_45_8
Type: TC
Location: 6646 - 7842 (-)
Gene ID: HRGMv2_1440_45_9
Type:
Location: 8018 - 8770 (-)
Gene ID: HRGMv2_1440_45_10
Type: CAZyme
Location: 8936 - 10309 (-)
Gene ID: HRGMv2_1440_45_11
Type: TF
Location: 10485 - 11237 (+)
Gene ID: HRGMv2_1440_45_12
Type: TC
Location: 11300 - 12973 (-)
Gene ID: HRGMv2_1440_45_13
Type: TC
Location: 13288 - 15666 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1440_45_9 vegan > omnivore 1.61633 0.00863
HRGMv2_1440_45_10 vegan > omnivore 1.45405 0.00863

🧭 Explore Read Mapping of CGC

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