Cluster: HRGMv2_1439_CGC20
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1439
- CGC Family ID: CGCFAM_00019
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1439_36 | HRGMv2_1439_36_5 | 6189 | 8438 | + | 1.I.1.1.3 |
| STP | HRGMv2_1439_36 | HRGMv2_1439_36_6 | 9062 | 9823 | + | Fer4 |
| TC | HRGMv2_1439_36 | HRGMv2_1439_36_7 | 10168 | 10680 | + | 4.A.1.2.2 |
| pfam | HRGMv2_1439_36 | HRGMv2_1439_36_8 | 10699 | 11553 | + | PRD | PRD | CAT_RBD |
| TC | HRGMv2_1439_36 | HRGMv2_1439_36_9 | 11653 | 13269 | + | 4.A.1.1.3 |
| CAZyme | HRGMv2_1439_36 | HRGMv2_1439_36_10 | 13273 | 13551 | + | GH4 |
| CAZyme | HRGMv2_1439_36 | HRGMv2_1439_36_11 | 13582 | 14655 | + | GH4 |
Gene ID: HRGMv2_1439_36_5
Type: TC
Location: 6189 - 8438 (+)
Type: TC
Location: 6189 - 8438 (+)
Gene ID: HRGMv2_1439_36_6
Type: STP
Location: 9062 - 9823 (+)
Type: STP
Location: 9062 - 9823 (+)
Gene ID: HRGMv2_1439_36_7
Type: TC
Location: 10168 - 10680 (+)
Type: TC
Location: 10168 - 10680 (+)
Gene ID: HRGMv2_1439_36_8
Type: pfam
Location: 10699 - 11553 (+)
Type: pfam
Location: 10699 - 11553 (+)
Gene ID: HRGMv2_1439_36_9
Type: TC
Location: 11653 - 13269 (+)
Type: TC
Location: 11653 - 13269 (+)
Gene ID: HRGMv2_1439_36_10
Type: CAZyme
Location: 13273 - 13551 (+)
Type: CAZyme
Location: 13273 - 13551 (+)
Gene ID: HRGMv2_1439_36_11
Type: CAZyme
Location: 13582 - 14655 (+)
Type: CAZyme
Location: 13582 - 14655 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp019414545
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.