dbCAN Logo

Cluster: HRGMv2_1439_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1439_7 HRGMv2_1439_7_43 48047 48490 + 4.A.6.1.16
pfam HRGMv2_1439_7 HRGMv2_1439_7_44 48490 48771 + YajC
TC HRGMv2_1439_7 HRGMv2_1439_7_45 48808 49290 + 4.A.6.1.4
TC HRGMv2_1439_7 HRGMv2_1439_7_46 49381 50181 + 4.A.6.1.4
TC HRGMv2_1439_7 HRGMv2_1439_7_47 50171 51253 + 4.A.6.1.4
TF HRGMv2_1439_7 HRGMv2_1439_7_48 51439 52170 + GntR
STP HRGMv2_1439_7 HRGMv2_1439_7_49 52285 53451 + SIS | SIS
CAZyme HRGMv2_1439_7 HRGMv2_1439_7_50 53569 54738 + CE9
Gene ID: HRGMv2_1439_7_43
Type: TC
Location: 48047 - 48490 (+)
Gene ID: HRGMv2_1439_7_44
Type: pfam
Location: 48490 - 48771 (+)
Gene ID: HRGMv2_1439_7_45
Type: TC
Location: 48808 - 49290 (+)
Gene ID: HRGMv2_1439_7_46
Type: TC
Location: 49381 - 50181 (+)
Gene ID: HRGMv2_1439_7_47
Type: TC
Location: 50171 - 51253 (+)
Gene ID: HRGMv2_1439_7_48
Type: TF
Location: 51439 - 52170 (+)
Gene ID: HRGMv2_1439_7_49
Type: STP
Location: 52285 - 53451 (+)
Gene ID: HRGMv2_1439_7_50
Type: CAZyme
Location: 53569 - 54738 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1439_7_44 vegan > omnivore 1.04132 0.01057

🧭 Explore Read Mapping of CGC

← Back to Cluster List