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Cluster: HRGMv2_1439_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1439_7 HRGMv2_1439_7_12 15797 17197 + GH1
TC HRGMv2_1439_7 HRGMv2_1439_7_13 17318 18661 + 4.A.3.2.9
TC HRGMv2_1439_7 HRGMv2_1439_7_14 18823 19125 + 4.A.3.2.9
TC HRGMv2_1439_7 HRGMv2_1439_7_15 19135 19467 + 4.A.3.2.3
pfam HRGMv2_1439_7 HRGMv2_1439_7_16 19709 20662 + ROK
pfam HRGMv2_1439_7 HRGMv2_1439_7_17 20829 21752 + DHH | DHHA2
TC HRGMv2_1439_7 HRGMv2_1439_7_18 22021 23379 + 2.A.33.1.1
Gene ID: HRGMv2_1439_7_12
Type: CAZyme
Location: 15797 - 17197 (+)
Gene ID: HRGMv2_1439_7_13
Type: TC
Location: 17318 - 18661 (+)
Gene ID: HRGMv2_1439_7_14
Type: TC
Location: 18823 - 19125 (+)
Gene ID: HRGMv2_1439_7_15
Type: TC
Location: 19135 - 19467 (+)
Gene ID: HRGMv2_1439_7_16
Type: pfam
Location: 19709 - 20662 (+)
Gene ID: HRGMv2_1439_7_17
Type: pfam
Location: 20829 - 21752 (+)
Gene ID: HRGMv2_1439_7_18
Type: TC
Location: 22021 - 23379 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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