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Cluster: HRGMv2_1437_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1437_2 HRGMv2_1437_2_28 27642 28811 - CE9
STP HRGMv2_1437_2 HRGMv2_1437_2_29 28929 30095 - SIS | SIS
TF HRGMv2_1437_2 HRGMv2_1437_2_30 30210 30941 - GntR
TC HRGMv2_1437_2 HRGMv2_1437_2_31 31127 32209 - 4.A.6.1.4
TC HRGMv2_1437_2 HRGMv2_1437_2_32 32199 32999 - 4.A.6.1.4
TC HRGMv2_1437_2 HRGMv2_1437_2_33 33090 33572 - 4.A.6.1.4
pfam HRGMv2_1437_2 HRGMv2_1437_2_34 33609 33890 - YajC
TC HRGMv2_1437_2 HRGMv2_1437_2_35 33890 34333 - 4.A.6.1.16
Gene ID: HRGMv2_1437_2_28
Type: CAZyme
Location: 27642 - 28811 (-)
Gene ID: HRGMv2_1437_2_29
Type: STP
Location: 28929 - 30095 (-)
Gene ID: HRGMv2_1437_2_30
Type: TF
Location: 30210 - 30941 (-)
Gene ID: HRGMv2_1437_2_31
Type: TC
Location: 31127 - 32209 (-)
Gene ID: HRGMv2_1437_2_32
Type: TC
Location: 32199 - 32999 (-)
Gene ID: HRGMv2_1437_2_33
Type: TC
Location: 33090 - 33572 (-)
Gene ID: HRGMv2_1437_2_34
Type: pfam
Location: 33609 - 33890 (-)
Gene ID: HRGMv2_1437_2_35
Type: TC
Location: 33890 - 34333 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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