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Cluster: HRGMv2_1436_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1436_3 HRGMv2_1436_3_47 60985 62412 - GH140
CAZyme HRGMv2_1436_3 HRGMv2_1436_3_48 62482 63726 - GH1
pfam HRGMv2_1436_3 HRGMv2_1436_3_49 63819 64574 - YdjC
TF HRGMv2_1436_3 HRGMv2_1436_3_50 64805 66703 + HTH_11
CAZyme HRGMv2_1436_3 HRGMv2_1436_3_51 66719 68131 + GH1
pfam HRGMv2_1436_3 HRGMv2_1436_3_52 68228 68587 + PTS_IIA
TC HRGMv2_1436_3 HRGMv2_1436_3_53 68842 70104 - 4.A.3.2.2
TC HRGMv2_1436_3 HRGMv2_1436_3_54 70119 70424 - 4.A.3.2.6
Gene ID: HRGMv2_1436_3_47
Type: CAZyme
Location: 60985 - 62412 (-)
Gene ID: HRGMv2_1436_3_48
Type: CAZyme
Location: 62482 - 63726 (-)
Gene ID: HRGMv2_1436_3_49
Type: pfam
Location: 63819 - 64574 (-)
Gene ID: HRGMv2_1436_3_50
Type: TF
Location: 64805 - 66703 (+)
Gene ID: HRGMv2_1436_3_51
Type: CAZyme
Location: 66719 - 68131 (+)
Gene ID: HRGMv2_1436_3_52
Type: pfam
Location: 68228 - 68587 (+)
Gene ID: HRGMv2_1436_3_53
Type: TC
Location: 68842 - 70104 (-)
Gene ID: HRGMv2_1436_3_54
Type: TC
Location: 70119 - 70424 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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