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Cluster: HRGMv2_1436_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1436_21 HRGMv2_1436_21_21 29172 30635 - 2.A.118.1.2
TF HRGMv2_1436_21 HRGMv2_1436_21_22 30833 31567 - GntR
pfam HRGMv2_1436_21 HRGMv2_1436_21_23 31822 34575 - Sigma54_activat | PRD | EIIA-man
CAZyme HRGMv2_1436_21 HRGMv2_1436_21_24 35124 36560 - GH32
pfam HRGMv2_1436_21 HRGMv2_1436_21_25 36590 36994 - EIIA-man
TC HRGMv2_1436_21 HRGMv2_1436_21_26 37028 37888 - 4.A.6.1.13
TC HRGMv2_1436_21 HRGMv2_1436_21_27 37881 38654 - 4.A.6.1.13
TC HRGMv2_1436_21 HRGMv2_1436_21_28 38670 39158 - 4.A.6.1.16
Gene ID: HRGMv2_1436_21_21
Type: TC
Location: 29172 - 30635 (-)
Gene ID: HRGMv2_1436_21_22
Type: TF
Location: 30833 - 31567 (-)
Gene ID: HRGMv2_1436_21_23
Type: pfam
Location: 31822 - 34575 (-)
Gene ID: HRGMv2_1436_21_24
Type: CAZyme
Location: 35124 - 36560 (-)
Gene ID: HRGMv2_1436_21_25
Type: pfam
Location: 36590 - 36994 (-)
Gene ID: HRGMv2_1436_21_26
Type: TC
Location: 37028 - 37888 (-)
Gene ID: HRGMv2_1436_21_27
Type: TC
Location: 37881 - 38654 (-)
Gene ID: HRGMv2_1436_21_28
Type: TC
Location: 38670 - 39158 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1436_21_22 vegan > omnivore 1.42851 0.00863

🧭 Explore Read Mapping of CGC

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