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Cluster: HRGMv2_1435_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1435_4 HRGMv2_1435_4_45 53396 53734 - 4.A.3.1.2
TF HRGMv2_1435_4 HRGMv2_1435_4_46 53949 54953 - LacI
TC HRGMv2_1435_4 HRGMv2_1435_4_47 55311 57086 + 4.A.3.1.1
CAZyme HRGMv2_1435_4 HRGMv2_1435_4_48 57153 58592 + GH1
TF HRGMv2_1435_4 HRGMv2_1435_4_49 58867 59877 - LacI
TC HRGMv2_1435_4 HRGMv2_1435_4_50 60153 61931 + 4.A.3.1.1
CAZyme HRGMv2_1435_4 HRGMv2_1435_4_51 62007 63428 + GH1
TF HRGMv2_1435_4 HRGMv2_1435_4_52 63624 64388 - HTH_DeoR
sulfatase HRGMv2_1435_4 HRGMv2_1435_4_53 64595 65647 + S1_4
TC HRGMv2_1435_4 HRGMv2_1435_4_54 65974 66456 - 4.A.6.1.5
Gene ID: HRGMv2_1435_4_45
Type: TC
Location: 53396 - 53734 (-)
Gene ID: HRGMv2_1435_4_46
Type: TF
Location: 53949 - 54953 (-)
Gene ID: HRGMv2_1435_4_47
Type: TC
Location: 55311 - 57086 (+)
Gene ID: HRGMv2_1435_4_48
Type: CAZyme
Location: 57153 - 58592 (+)
Gene ID: HRGMv2_1435_4_49
Type: TF
Location: 58867 - 59877 (-)
Gene ID: HRGMv2_1435_4_50
Type: TC
Location: 60153 - 61931 (+)
Gene ID: HRGMv2_1435_4_51
Type: CAZyme
Location: 62007 - 63428 (+)
Gene ID: HRGMv2_1435_4_52
Type: TF
Location: 63624 - 64388 (-)
Gene ID: HRGMv2_1435_4_53
Type: sulfatase
Location: 64595 - 65647 (+)
Gene ID: HRGMv2_1435_4_54
Type: TC
Location: 65974 - 66456 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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