Cluster: HRGMv2_1435_CGC10
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1435
- CGC Family ID: CGCFAM_00969
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1435_16 | HRGMv2_1435_16_25 | 32883 | 33356 | + | 4.A.6.1.18 |
| TC | HRGMv2_1435_16 | HRGMv2_1435_16_26 | 33366 | 34133 | + | 4.A.6.1.13 |
| NULL(UNKNOWN) | HRGMv2_1435_16 | HRGMv2_1435_16_27 | 34136 | 34285 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1435_16 | HRGMv2_1435_16_28 | 34415 | 34969 | + | 4.A.6.1.13 |
| pfam | HRGMv2_1435_16 | HRGMv2_1435_16_29 | 34996 | 35394 | + | EIIA-man |
| CAZyme | HRGMv2_1435_16 | HRGMv2_1435_16_30 | 35407 | 36531 | + | GH172 |
Gene ID: HRGMv2_1435_16_25
Type: TC
Location: 32883 - 33356 (+)
Type: TC
Location: 32883 - 33356 (+)
Gene ID: HRGMv2_1435_16_26
Type: TC
Location: 33366 - 34133 (+)
Type: TC
Location: 33366 - 34133 (+)
Gene ID: HRGMv2_1435_16_27
Type:
Location: 34136 - 34285 (+)
Type:
Location: 34136 - 34285 (+)
Gene ID: HRGMv2_1435_16_28
Type: TC
Location: 34415 - 34969 (+)
Type: TC
Location: 34415 - 34969 (+)
Gene ID: HRGMv2_1435_16_29
Type: pfam
Location: 34996 - 35394 (+)
Type: pfam
Location: 34996 - 35394 (+)
Gene ID: HRGMv2_1435_16_30
Type: CAZyme
Location: 35407 - 36531 (+)
Type: CAZyme
Location: 35407 - 36531 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp019419445
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1435_16_25 | vegan > omnivore | 1.15635 | 0.01332 |
| HRGMv2_1435_16_30 | vegan > omnivore | 1.11805 | 0.01332 |