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Cluster: HRGMv2_1434_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1434_25 HRGMv2_1434_25_6 5192 6361 - CE9
STP HRGMv2_1434_25 HRGMv2_1434_25_7 6479 7645 - SIS | SIS
TF HRGMv2_1434_25 HRGMv2_1434_25_8 7760 8491 - GntR
TC HRGMv2_1434_25 HRGMv2_1434_25_9 8677 9759 - 4.A.6.1.4
TC HRGMv2_1434_25 HRGMv2_1434_25_10 9749 10549 - 4.A.6.1.4
TC HRGMv2_1434_25 HRGMv2_1434_25_11 10640 11122 - 4.A.6.1.4
pfam HRGMv2_1434_25 HRGMv2_1434_25_12 11159 11440 - YajC
TC HRGMv2_1434_25 HRGMv2_1434_25_13 11440 11883 - 4.A.6.1.16
Gene ID: HRGMv2_1434_25_6
Type: CAZyme
Location: 5192 - 6361 (-)
Gene ID: HRGMv2_1434_25_7
Type: STP
Location: 6479 - 7645 (-)
Gene ID: HRGMv2_1434_25_8
Type: TF
Location: 7760 - 8491 (-)
Gene ID: HRGMv2_1434_25_9
Type: TC
Location: 8677 - 9759 (-)
Gene ID: HRGMv2_1434_25_10
Type: TC
Location: 9749 - 10549 (-)
Gene ID: HRGMv2_1434_25_11
Type: TC
Location: 10640 - 11122 (-)
Gene ID: HRGMv2_1434_25_12
Type: pfam
Location: 11159 - 11440 (-)
Gene ID: HRGMv2_1434_25_13
Type: TC
Location: 11440 - 11883 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1434_25_12 vegan > omnivore 1.01517 0.00863

🧭 Explore Read Mapping of CGC

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